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Diferencias en la aptitud entre colectas de "alpistillo" (Phalaris minos Retz.) resistentes y susceptible a inhibidores de la ACCasa. Colegio de Postgraduados
Torres García, Jesús Rubén.
Las malezas compiten intensamente con los cultivos, por lo cual, los agricultores emplean prácticas de control (manual, mecánico y químico) para eliminarlas. Los herbicidas ejercen una presión de selección extrema (99.99%) sobre las poblaciones. Como consecuencia, en unas pocas generaciones se observan individuos resistentes (R) en las poblaciones de maleza. La resistencia a herbicidas es un proceso evolutivo causado por cambios metabólicos o genéticos. En algunas especies la resistencia va acompañada de una disminución en la aptitud competitiva (fitness). Esto puede ocasionar que las plantas resistentes sean desplazadas cuando el factor de selección se retire de las poblaciones. Phalaris minor (Poaceae) es una maleza que evolucionó hacia la adquisición de...
Palavras-chave: Fitness; Costo de la resistencia; Evolución; Ecología evolutiva; Doctorado; Botánica; Cost of resistance; Evolution; Evolutionary ecology.
Ano: 2012 URL: http://hdl.handle.net/10521/1778
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Change and Identity in Complex Systems Ecology and Society
Cumming, Graeme S; University of Florida; cummingg@wec.ufl.edu; Collier, John; University of KwaZulu-Natal; collierj@ukzn.ac.za.
Tipo: Peer-Reviewed Reports Palavras-chave: Complexity; Resilience; Identity; Adaptive cycle; Limitation; Replacement; Random walk; Evolution; Ecosystem; Economy; Society; Social-ecological system; Metamodels.
Ano: 2005
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WITHIN-POPULATION GENETIC DIVERSITY OF CLIMBING PLANTS AND TREES IN A TEMPERATE FOREST IN CENTRAL CHILE Gayana Botánica
Torres-Díaz,Cristian; Ruiz,Eduardo; Salgado-Luarte,Cristian; Molina-Montenegro,Marco A; Gianoli,Ernesto.
The climbing habit is a key innovation in angiosperm evolution: climbing plant taxa have greater species richness than their non-climbing sister groups. It is considered that highly diversified clades should show increased among-population genetic differentiation. Less clear is the expected pattern regarding within-population genetic diversity in speciose lineages. We tested the hypothesis of greater within-population genetic diversity in climbing plants compared to trees in a temperate forest in central Chile. The assumption underlying this hypothesis is that higher among-population differentiation in climbers compared to trees should reflect higher genetic diversity as well. AFLP markers from 167 individual plants from 14 species (seven climbers and...
Tipo: Journal article Palavras-chave: AFLP; Climbers; Evolution; Genetic variability; Key innovation.
Ano: 2013 URL: http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0717-66432013000100005
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PHYLOGENETIC RELATIONSHIPS AMONG CHILEAN SPECIES OF DRIMYS (WTNTERACEAE) BASED ON ITS SEQUENCES AND INSERTION/DELETION EVENTS Gayana Botánica
Ruiz,Eduardo; Toro,Oscar; Crawford,Daniel J; Stuessy,Tod F; Negritto,María A; Baeza,Carlos; Becerra,José.
Phylogenetic relationships among Chilean species of Drimys as well asD. granadensis from Central America andD. angustifolia from Brazil were reconstructed using internal transcribed spacers (ITS) of nuclear ribosomal DNA and a parsimony analysis. Our results at the family level were congruent with previous phylogenetic hypotheses. Molecular data indicate that the Juan Fernandez Island endemic D. confertifolia diverged early in the evolution of the genus, and it is not closely related to the continental species D. winteri, as might be expected on the basis of morphology and biogeography. The ITS phytogeny also provides general support for a recent distribution of species on the western side of the Andes Mountains; the only exception is D. andina, which may...
Tipo: Journal article Palavras-chave: Drimys; Evolution; ITS; Indels; Winteraceae.
Ano: 2008 URL: http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0717-66432008000200008
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Analysis of castor bean ribosome-inactivating proteins and their gene expression during seed development Genet. Mol. Biol.
Loss-Morais,Guilherme; Turchetto-Zolet,Andreia Carina; Etges,Matheus; Cagliari,Alexandro; Körbes,Ana Paula; Maraschin,Felipe dos Santos; Margis-Pinheiro,Márcia; Margis,Rogério.
Ribosome-inactivating proteins (RIPs) are enzymes that inhibit protein synthesis after depurination of a specific adenine in rRNA. The RIP family members are classified as type I RIPs that contain an RNA-N-glycosidase domain and type II RIPs that contain a lectin domain (B chain) in addition to the glycosidase domain (A chain). In this work, we identified 30 new plant RIPs and characterized 18 Ricinus communis RIPs. Phylogenetic and functional divergence analyses indicated that the emergence of type I and II RIPs probably occurred before the monocot/eudicot split. We also report the expression profiles of 18 castor bean genes, including those for ricin and agglutinin, in five seed stages as assessed by quantitative PCR. Ricin and agglutinin were the most...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Agglutinin; Evolution; Lipase; Ricinus communis; Ricin; RIPs.
Ano: 2013 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572013000100011
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Evo-devo of non-bilaterian animals Genet. Mol. Biol.
Lanna,Emilio.
The non-bilaterian animals comprise organisms in the phyla Porifera, Cnidaria, Ctenophora and Placozoa. These early-diverging phyla are pivotal to understanding the evolution of bilaterian animals. After the exponential increase in research in evolutionary development (evo-devo) in the last two decades, these organisms are again in the spotlight of evolutionary biology. In this work, I briefly review some aspects of the developmental biology of nonbilaterians that contribute to understanding the evolution of development and of the metazoans. The evolution of the developmental genetic toolkit, embryonic polarization, the origin of gastrulation and mesodermal cells, and the origin of neural cells are discussed. The possibility that germline and stem cell...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Early-diverging metazoans; BMP; FGF; Wnt; Stem cells; Evolution; Nervous system.
Ano: 2015 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572015000300284
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Searching for ancient balanced polymorphisms shared between Neanderthals and Modern Humans Genet. Mol. Biol.
Viscardi,Lucas Henriques; Paixão-Côrtes,Vanessa Rodrigues; Comas,David; Salzano,Francisco Mauro; Rovaris,Diego; Bau,Claiton Dotto; Amorim,Carlos Eduardo G.; Bortolini,Maria Cátira.
Abstract Hominin evolution is characterized by adaptive solutions often rooted in behavioral and cognitive changes. If balancing selection had an important and long-lasting impact on the evolution of these traits, it can be hypothesized that genes associated with them should carry an excess of shared polymorphisms (trans- SNPs) across recent Homo species. In this study, we investigate the role of balancing selection in human evolution using available exomes from modern (Homo sapiens) and archaic humans (H. neanderthalensis and Denisovan) for an excess of trans-SNP in two gene sets: one associated with the immune system (IMMS) and another one with behavioral system (BEHS). We identified a significant excess of trans-SNPs in IMMS (N=547), of which six of...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Human behavior; Evolution; Balancing selection; Immune genes; Behavioral genes.
Ano: 2018 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572018000100067
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Description of a ZZ/ZW sex chromosome system in Thoracocharax cf. stellatus (Teleostei, Characiformes, Gasteropelecidae) Genet. Mol. Biol.
Carvalho,Margarida Lima; Oliveira,Claudio; Foresti,Fausto.
The family Gasteropelecidae is composed of three genera and eight species. This study shows that Thoracocharax cf. stellatus has 2n = 52 chromosomes for both sexes. The five males studied showed 8 metacentric, 16 submetacentric, 4 subtelocentric, and 24 acrocentric chromosomes; the seven females showed only one submetacentric chromosome, belonging to pair 11, and one extra acrocentric chromosome, smaller than all the other chromosomes, characterizing the presence of a ZZ/ZW sex chromosome system in this species. Nucleolus organizing regions (NORs) were detected on the short arms of the subtelocentric chromosome pair 13. Constitutive heterochromatin was identified at pericentromeric and terminal positions in almost all chromosomes. The W chromosome was...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Sex chromosomes; ZW; DNA content; Fish; Evolution.
Ano: 2002 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572002000300008
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The complete chloroplast genome sequences of three Spondias species reveal close relationship among the species Genet. Mol. Biol.
Santos,Vanessa; Almeida,Cícero.
Abstract This study reports the complete chloroplast sequences of three Spondias species. The genome sequences were obtained for Spondias tuberosa, Spondias bahienses, and Spondias mombin using the Illumina sequencing technology by a combination of de novo methods and a reference-guided assembly using Sapindus mukorossi as reference. The genomes of S. tuberosa, S. bahiensis, and S. mombin had 162,036, 162,218, and 162,302 bp, respectively. The coding regions exhibited 130 genes, including 34–35 tRNAs and 4 rRNAs. The results revealed synteny among the genomes, with high conservation in the gene order and content and CG content. The inverted repeat regions (IRA and IRB) and the large and small single copies were very similar among the three genomes. The...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Plastome; Evolution; Spondias.
Ano: 2019 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572019000100132
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Genome-wide analysis of the Glycerol-3-Phosphate Acyltransferase (GPAT) gene family reveals the evolution and diversification of plant GPATs Genet. Mol. Biol.
Waschburger,Edgar; Kulcheski,Franceli Rodrigues; Veto,Nicole Moreira; Margis,Rogerio; Margis-Pinheiro,Marcia; Turchetto-Zolet,Andreia Carina.
Abstract sn-Glycerol-3-phosphate 1-O-acyltransferase (GPAT) is an important enzyme that catalyzes the transfer of an acyl group from acyl-CoA or acyl-ACP to the sn-1 or sn-2 position of sn-glycerol-3-phosphate (G3P) to generate lysophosphatidic acids (LPAs). The functional studies of GPAT in plants demonstrated its importance in controlling storage and membrane lipid. Identifying genes encoding GPAT in a variety of plant species is crucial to understand their involvement in different metabolic pathways and physiological functions. Here, we performed genome-wide and evolutionary analyses of GPATs in plants. GPAT genes were identified in all algae and plants studied. The phylogenetic analysis showed that these genes group into three main clades. While clades...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Plant lipids; GPAT enzymes; Phylogeny; Evolution; Gene expression.
Ano: 2018 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572018000200355
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Polymorphism of Sooty-fronted Spinetail (Synallaxis frontalis Aves: Furnariidae): Evidence of chromosomal rearrangements by pericentric inversion in autosomal macrochromosomes Genet. Mol. Biol.
Souza,Marcelo Santos de; Barcellos,Suziane Alves; Costa,Alice Lemos; Kretschmer,Rafael; Garnero,Analía Del Valle; Gunski,Ricardo José.
Abstract The Passeriformes is the most diverse and cytogenetically well-known clade of birds, comprising approximately 5,000 species. The sooty-fronted spinetail (Synallaxis frontalis Aves: Furnariidae) species, which belongs to the order Passeriformes, is typically found in South America, where it is widely distributed. Polymorphisms provide genetic variability, important for several evolutionary processes, including speciation and adaptation to the environment. The aim of this work was to analyze the possible cytotypes and systemic events involved in the species polymorphism. Of the sampled 19 individuals, two thirds were polymorphic, an event supposedly linked to mutations resulting from genomic evolution that can be transmitted hereditarily. A...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Chromosomal polymorphism; Evolution; Cytogenetics.
Ano: 2019 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572019000100062
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Karyotype characterization of Trigona fulviventris Guérin, 1835 (Hymenoptera, Meliponini) by C banding and fluorochrome staining: report of a new chromosome number in the genus Genet. Mol. Biol.
Domingues,Alayne Magalhães Trindade; Waldschmidt,Ana Maria; Andrade,Sintia Emmanuelle; Andrade-Souza,Vanderly; Alves,Rogério Marco de Oliveira; Silva Junior,Juvenal Cordeiro da; Costa,Marco Antônio.
Although many species of the genus Trigona have been taxonomically described, cytogenetic studies of these species are still rare. The aim of the present study was to obtain cytogenetic data by conventional staining, C banding and fluorochrome staining for the karyotype characterization of the species Trigona fulviventris. Cytogenetic analysis revealed that this species possesses a diploid chromosome number of 2n = 32, different from most other species of this genus studied so far. This variation was probably due to the centric fusion in a higher numbered ancestral karyotype, this fusion producing the large metacentric chromosome pair and the lower chromosome number observed in Trigona fulviventris. Heterochromatin was detected in the pericentromeric...
Tipo: Info:eu-repo/semantics/other Palavras-chave: Cytogenetics; Heterochromatin; Evolution; Stingless bees.
Ano: 2005 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572005000300009
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Nuclear DNA content determination in Characiformes fish (Teleostei, Ostariophysi) from the Neotropical region Genet. Mol. Biol.
Carvalho,Margarida Lima; Oliveira,Claudio; Navarrete,Maria Clara; Froehlich,Otávio; Foresti,Fausto.
In the present study, nuclear DNA content was analyzed in 53 species of Characiformes fish from the Neotropical region. Diploid number ranged from 2n = 48 in Astyanax fasciatus, Gymnocorymbus ternetzi and Hyphessobrycon griemi to 2n = 102 in Potamorhina squamoralevis, with a modal number of 54 chromosomes. Nuclear DNA content ranged from 1.70 ± 0.04 pg of DNA per diploid nucleus in Acestrorhynchus pantaneiro to 3.94 ± 0.09 pg in Tetragonopterus chalceus. A general analysis showed a mean value of 2.9 pg of DNA per diploid nucleus. Very similar DNA content values were observed in the species of the family Cynodontidae which showed a variation of 3% between the two genera studied. Small variations were observed between populations of Gymnocorymbus ternetzi,...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Nuclear DNA; DNA content; Chromosome; Fish; Evolution.
Ano: 2002 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572002000100010
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Methods for detection of horizontal transfer of transposable elements in complete genomes Genet. Mol. Biol.
Carvalho,Marcos Oliveira de; Loreto,Elgion L.S..
Recent advances in nucleic acid sequencing technology are creating a diverse landscape for the analysis of horizontal transfer in complete genomes. Previously limited to prokaryotes, the availability of complete genomes from close eukaryotic species presents an opportunity to validate hypotheses about the patterns of evolution and mechanisms that drive horizontal transfer. Many of those methods can be transported from methods previously used in prokaryotic genomes, as the assumptions for horizontal transfer can be interpreted as the same. Some methods, however, require a complete adaptation, while others need refinements in sensitivity and specificity to deal with the huge datasets generated from next-generation sequencing technologies. Here we list the...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Transposable element; Horizontal transfer; Genome; Computational analysis; Evolution.
Ano: 2012 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000600024
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Intrachromosomal karyotype asymmetry in Orchidaceae Genet. Mol. Biol.
Medeiros-Neto,Enoque; Nollet,Felipe; Moraes,Ana Paula; Felix,Leonardo P..
Abstract The asymmetry indexes have helped cytotaxonomists to interpret and classify plant karyotypes for species delimitation efforts. However, there is no consensus about the best method to calculate the intrachromosomal asymmetry. The present study aimed to compare different intrachromosomal asymmetry indexes in order to indicate which are more efficient for the estimation of asymmetry in different groups of orchids. Besides, we aimed to compare our results with the Orchidaceae phylogenetic proposal to test the hypothesis of Stebbins (1971). Through a literature review, karyotypes were selected and analyzed comparatively with ideal karyotypes in a cluster analysis. All karyotypes showed some level of interchromosomal asymmetry, ranging from slightly...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Asymmetry index; Karyotype symmetry; Chromosome; Cytogenetic; Evolution.
Ano: 2017 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572017000400610
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Phylogenomic and single nucleotide polymorphism analyses revealed the hybrid origin of Spondias bahiensis (family Anacardiaceae): de novo genome sequencing and comparative genomics Genet. Mol. Biol.
Nobre,Lydayanne Lilás de Melo; Santos,José Daniel Oliveira dos; Leite,Rychard; Almeida,Cícero.
Abstract The genus Spondias (family Anacardiaceae) comprises 19 taxa, ten of which occur in Neotropical regions. Spondias bahiensis has been suggested to be a hybrid, although initial evidence does not support this hypothesis. The aim of this study was to test the hypothesis of the hybrid origin of S. bahiensis using high-throughput sequencing with single nucleotide polymorphism (SNP) analysis, characterization of intragenomic nuclear ribosomal DNA (nrDNA), and nuclear and chloroplast phylogenomic analyses. The SNP analysis revealed a high number of SNPs in the S. bahiensis genome, and with respect to nrDNA, S. bahiensis shared approximately half of the SNP alleles with S. tuberosa, but not with S. mombin. Combining the SNP analysis with nrDNA phylogeny...
Tipo: Info:eu-repo/semantics/article Palavras-chave: RDNA; Phylogenetics; Evolution; Hybrid offspring.
Ano: 2018 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572018000500878
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Molecular evolution of HoxA13 and the multiple origins of limbless morphologies in amphibians and reptiles Genet. Mol. Biol.
Singarete,Marina E.; Grizante,Mariana B.; Milograna,Sarah R.; Nery,Mariana F.; Kin,Koryu; Wagner,Günter P.; Kohlsdorf,Tiana.
Developmental processes and their results, morphological characters, are inherited through transmission of genes regulating development. While there is ample evidence that cis-regulatory elements tend to be modular, with sequence segments dedicated to different roles, the situation for proteins is less clear, being particularly complex for transcription factors with multiple functions. Some motifs mediating protein-protein interactions may be exclusive to particular developmental roles, but it is also possible that motifs are mostly shared among different processes. Here we focus on HoxA13, a protein essential for limb development. We asked whether the HoxA13 amino acid sequence evolved similarly in three limbless clades: Gymnophiona, Amphisbaenia and...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Development; Evolution; HoxA13; Molecular signatures; Limblessness.
Ano: 2015 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572015000300255
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Nuclear DNA content in 20 species of Siluriformes (Teleostei: Ostariophysi) from the Neotropical region Genet. Mol. Biol.
Fenerich,Paulo César; Foresti,Fausto; Oliveira,Claudio.
In the present study, 20 species of Siluriformes fish were analyzed in order to determine their nuclear DNA content and compare these data with their diploid number. In addition, the extension and importance of the changes that occurred during the process of diversification in the group of Neotropical freshwater catfish were investigated. The only species studied of the family Doradidae, Rhinodoras d'orbignyi (2n = 58), presented 3.46 ± 0.13 pg of DNA. Among the species of the family Heptapteridae, the values of nuclear DNA content and the diploid numbers ranged from 1.13 ± 0.09 pg of DNA in Pimelodella sp. (2n = 46) to 2.38 ± 0.07 pg of DNA in Imparfinis mirini (2n = 58). The family Loricariidae showed the widest variation in diploid number and nuclear...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Nuclear DNA; DNA content; Chromosome; Fish; Evolution.
Ano: 2004 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572004000300008
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Some AFLP amplicons are highly conserved DNA sequences mapping to the same linkage groups in two F2 populations of carrot Genet. Mol. Biol.
Santos,Carlos A.F.; Simon,Philipp W..
Amplified fragment length polymorphism (AFLP) is a fast and reliable tool to generate a large number of DNA markers. In two unrelated F2 populations of carrot (Daucus carota L.), Brasilia x HCM and B493 x QAL (wild carrot), it was hypothesized that DNA 1) digested with the same restriction endonuclease enzymes and amplified with the same primer combination and 2) sharing the same position in polyacrylamide gels should be conserved sequences. To test this hypothesis AFLP fragments from polyacrylamide gels were eluted, reamplified, separated in agarose gels, purified, cloned and sequenced. Among thirty-one paired fragments from each F2 population, twenty-six had identity greater than 91% and five presented identity of 24% to 44%. Among the twenty-six...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Daucus carota; Evolution; Molecular markers; SCAR.
Ano: 2002 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572002000200013
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Cyanobacterial nitrogenases: phylogenetic diversity, regulation and functional predictions Genet. Mol. Biol.
Esteves-Ferreira,Alberto A.; Cavalcanti,João Henrique Frota; Vaz,Marcelo Gomes Marçal Vieira; Alvarenga,Luna V.; Nunes-Nesi,Adriano; Araújo,Wagner L..
Abstract Cyanobacteria is a remarkable group of prokaryotic photosynthetic microorganisms, with several genera capable of fixing atmospheric nitrogen (N2) and presenting a wide range of morphologies. Although the nitrogenase complex is not present in all cyanobacterial taxa, it is spread across several cyanobacterial strains. The nitrogenase complex has also a high theoretical potential for biofuel production, since H2 is a by-product produced during N2 fixation. In this review we discuss the significance of a relatively wide variety of cell morphologies and metabolic strategies that allow spatial and temporal separation of N2 fixation from photosynthesis in cyanobacteria. Phylogenetic reconstructions based on 16S rRNA and nifD gene sequences shed light on...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Cyanobacteria; Evolution; Hydrogen; Nitrogen fixation; Molecular phylogeny.
Ano: 2017 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572017000200261
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